Operation
This document describes how to operate the Validate Tool. The following topics can be found in this document:
- Quick Start
- Command-Line Options
- Advanced Usage
- Report Format
- Common Errors
- Performance
Note: The command-line examples in this section have been broken into multiple lines for readability. The commands should be reassembled into a single line prior to execution.
Quick Start
This section is intended to give a quick and easy way to run the Validate Tool. For a more detailed explanation on other ways to run the tool, go to the Advanced Usage section.
Validating a Product
The command below shows the recommended way to validate a single product:
% validate --report validate-report.txt --target product.xml
This validates the given product against the latest core schema and schematron packaged with the tool and writes the results to a file.
Validating a Bundle
The command below shows the recommended way to validate a bundle:
% validate --rule pds4.bundle --checksum-manifest checksum-manifest.txt --report validate-report.txt --target $HOME/pds/bundle
The –report flag indicates to the tool to apply bundle validation rules to the target bundle. This means that validation at the bundle level will be performed, which includes referential integrity checking among other things. Please see the Validation Rules section for more details. The –checksum-manifest flag performs additional checksum validation.
Validating References with PDS Registry (NEW)
Prerequisites:
- User has authorized access to PDS Registry
- Data has been harvested into the PDS Registry
- Validate is running on machine with IP address within whitelisted subnets for Registry access.
The command below shows the recommended way to validate all product references for a product and any child products:
% validate-refs --auth-opensearch /path/to/harvest-config.xml --threads 5 urn:nasa:pds:my-bundle::1.0
16:05:22,982 WARN main CommandLineInterface:process:65 - Using OpenSearch Registry to check references.
16:05:24,539 ERROR Thread-0 Reference Integrity:run:52 - In the search the lidvid 'urn:nasa:pds:my-bundle::1.0' references 'urn:nasa:pds:context:instrument:BAD' that is missing in the database.
This utility uses the PDS Registry to check all references from a particular a product.
If given a bundle LIDVID, it will validate the references for the bundle, it's child collections, and their child products.
If given a collection LIDVID, it will validate the references for the collection, and all it's child products.
Use your harvest configuration file as input to this tool in order to utilize the same authentication as Harvest.
Command-Line Options
To see the latest command-line options, run the following command for both the validate and validate-refs utilities:
% validate -h
% validate-refs -h
Advanced Usage
This section describes more advanced ways to run the tool, as well as its behaviors and caveats.
Tool Execution
This section demonstrates some of the ways that the tool can be executed using the command-line option flags:
-
Validating a Target Directory
-
Validating Against User-Specified Schemas
-
Validating Against User-Specified XML Catalogs
-
Validating Against User-Specified Schematron Files
-
Validating Against Label Specified Schemas and Schematrons
-
Validating Against an Older Version of the PDS4 Data Model
-
Ignoring Sub-Directories During Validation
-
Changing Tool Behaviors With The Configuration File
Validating a Target Directory
The following command demonstrates the validation of a target directory against the core PDS schemas:
% validate --target /home/pds/collection
Validating Against User-Specified Schemas and Schematrons
Specifying XML Schemas and schematrons on the command line will allow the Validate Tool to validate against the user-specified schemas and schematrons instead of those packaged with the tool. The following command demonstrates the validation of a single product label against a user-specified schema and schematron:
% validate --target /home/pds/dph_example_archive_VG2PLS/data/ele_mom_tblChar.xml --schema /home/pds/dph_example_archive_VG2PLS/xml_schema/PDS4_PDS_1700.xsd, /home/pds/dph_example_archive_VG2PLS/xml_schema/PDS4_DPH_1700.xsd --schematron /home/pds/dph_example_archive_VG2PLS/xml_schema/PDS4_PDS_1700.sch
The following command demonstrates the validation of a set of target files against a set of user-specified schemas:
% validate --target producta.xml, productb.xml --schema producta.xsd, productb.xsd
Validating Against User-Specified XML Catalogs
The following command demonstrates the validation of a single data product against a user-specified XML Catalog:
% validate --target product.xml --catalog catalog.xml
Validating Against Label Specified Schemas and Schematrons
The following command demonstrates forcing the tool to validate against the schemas and schematrons specified in a given label.
% validate --target product.xml --force
Note that validating with the force flag option versus passing in the label specified schemas using the -x flag may yield different validation results. This is due to how the underlying Xerces library treats these 2 scenarios. Basically, with the force flag behavior, namespaces are resolved by matching the element namespace in the label to one of the namespaces declared in the schemaLocation attribute of the label. When passing in schemas using the -x flag, those user given schemas override any schemas specified in the schemaLocation attribute of the label. They are read in and cached in memory prior to the validation step. Namespaces are then resolved by matching the element namespace to one defined in one of those schemas cached in memory.
Ignoring Sub-Directories During Validation
By default, the Validate Tool will recursively traverse a target directory during validation. The local flag option is used to tell the Validate Tool to not perform recursion. The following command demonstrates the validation of a target directory without directory recursion:
% validate --target /home/pds/collection --local
Changing Tool Behaviors With The Configuration File
A configuration file can be passed into the command-line to change the default behaviors of the tool and to also provide users a way to perform validation with a single flag. For more details on how to setup the configuration file, see the Using a Configuration File section.
The following command demonstrates performing validation using a configuration file:
% validate --config config.txt
Specifying Targets
Targets are validated in the order in which they are specified on the command-line. They can be specified implicitly and explicitly.
To specify targets implicitly, it is best to specify them first on the command-line before any other command-line option flags. The following command demonstrates the validation of an implicitly defined, single target product label:
% validate --target product.xml
The following command demonstrates the validation of implicitly defined, multiple targets:
% validate --target product.xml, /home/pds/collection
Note: Implicit targets should not be specified after option flags that allow multiple arguments (see example below). Unexpected results can occur.
% validate --schema product.xsd --target product.xml
In this example, the Validate Tool will inadvertently treat the implicit target, product.xml, as a schema file.
Targets can be specified both implicitly and explicitly at the same time. Targets specified implicitly are validated first, followed by those that are specified explicitly with the target flag.
The following command demonstrates the validation of multiple product labels, specified both implicitly and explicitly:
% validate producta.xml, productb.xml --target productc.xml, /home/pds/collection
In this example, producta.xml and productb.xml will get validated first, then productc.xml and the product labels in /home/pds/collection will get validated next.
In each scenario above, the target product(s) were the equivalent of observational or document products. The data model also consists of bundle and collection products, which in turn reference other products. When the Validate Tool encounters one of these products, it traverses the inventory associated with that product and validates each product referenced as well as the target product.
Validation Rules
The Validate Tool provides the capability of doing various additional checks passed the usual PDS4 label validation. This is done through the -R, –rule flag option. The valid values are the following:
-
pds4.label
-
pds4.folder
-
pds4.collection
-
pds4.bundle
-
pds3.volume
If the -R flag is not specified on the command-line, the default behavior is to use the pds4.label rule for target file inputs and to use the pds4.folder rule for target directory inputs. This section details the checks that are made for each of the rule types. The command-line run examples below reference the example PDS4 Archive Bundle that can be found on the PDS4 web site.
pds4.label
The pds4.label validation rule will:
-
Check that a product label conforms to a given schema and schematron.
-
Check that files referenced in a product label exist.
-
Check that the file references in a product label and the file on the file system match case.
-
Check that file reference checksums in a product label matches their actual checksums, if present.
-
Perform checksum validation against a Checksum Manifest file, if supplied.
The following example demonstrates validating a product label using the default pds4.label validation rule:
%> validate --target /home/pds/dph_example_archive_VG2PLS/data/ele_mom_tblChar.xml
pds4.bundle
The pds4.bundle validation rule applies the pds4.collection validation rule on each collection found within a target collection. In addition, it will:
-
Check that files and directories at the root of the target bundle are valid as defined in section 2B.2.2.1 of the PDS4 Standards Reference.
-
Perform referential integrity checking among the target bundle and its members.
-
Verify that the LID of the bundle is used as the base of the LIDs of collections that are members of the bundle.
The following example demonstrates running the tool using the PDS4 Bundle validation rules on a target bundle:
%> validate --target /home/pds/dph_example_archive_VG2PLS --rule pds4.bundle
Note that the -e flag option to filter on specific files is ignored when validating under the pds4.bundle rules.
pds4.folder
The pds4.folder validation rule allows the tool to do a file-by-file validation using the pds4.label rule on each file found in the target directory.
The following example demonstrates performing a file-by-file validation on a target directory:
%> validate --target /home/pds/dph_example_archive_VG2PLS
pds4.collection
The pds4.collection validation rule applies the pds4.label validation rule on each product label found within a target collection. In addition, it will:
-
Check that file names follow the file-naming rules as defined in section 6C.1.1 of the PDS4 Standards Reference.
-
Check that file names do not match the prohibitied file names as defined in section 6C.1.2 of the PDS4 Standards Reference.
-
Check that file names do not contain the prohibitied base names as defined in section 6C.1.4 of the PDS4 Standards Reference.
-
Check that directory names follow directory-naming rules as defined in section 6C.2.1 of the PDS4 Standards Reference.
-
Check that directory names do not match prohibited directory names as defined in section 6C.2.3 of the PDS4 Standards Reference.
-
Check that all files in the target collection are referenced by some label.
-
Perform referential integrity checking among the target collection and its members.
-
Verify that the LID of the collection is used as the base of the LIDs of products that are members of the collection.
The following example demonstrates applying a PDS4 Collection validation rule on a target collection:
%> validate --target /home/pds/dph_example_archive_VG2PLS/data --rule pds4.collection
Note that the -e flag option to filter on specific files is ignored when validating under the pds4.collection rules.
pds3.volume
The pds3.volume validation rule allows the Validate Tool to perform PDS3 volume validation on a target directory. Currently, only local targets are supported for this validation rule.
The following example demonstrates running the tool against a PDS3 volume:
%> validate --target / home/pds/VG2-J-PLS-5-SUMM-ELE-MOM-96.0SEC-V1.0 --rule pds3.volume
Referential Integrity Checking
The Validate Tool performs referential integrity checking within a given target directory when the pds4.collection or pds4.bundle validation rules are applied to a validation run (via the -R, –rule flag option). Assuming that the target directory points to a full PDS4 bundle, the following referential integrity checks are made as the tool validates each product:
For Bundle products,
-
Verify that each Collection member of a Bundle is present within the given target.
-
Verify that each Collection member of a Bundle is referenced only once within the given target.
For Collection products,
-
Verify that each Collection product is referenced by a Bundle product within the given target.
-
Verify that each Product member of a Collection is present within the given target.
-
Verify that each Product member of a Collection is referenced only once within the given target.
All other products are assumed to be members of a Collection. So for these, the tool will verify that each product is referenced by a Collection product within the given target.
It is important to note that the tool only performs referential integrity checking on the targets that the tool is given. As an example, it is fine to specify a target directory that contains just a Collection product and its members:
% validate ${HOME}/bundle/collection --rule pds4.collection
In this case, the tool will not report that the given Collection is not referenced by a Bundle product.
Another thing to note is that the report will record verified references under the INFO message severity level. So in order to see these messages, run the tool with the verbose level set to 1 to produce a report with the INFO messages. The following command demonstrates running the tool with the severity level set to INFO and above:
% validate ${HOME}/bundle1 --rule pds4.bundle -v1
Below is a snippet of an example report of a validation run using the pds4.bundle rules and the severity level set to INFO and above:
...
PDS4 Bundle Level Validation Results
PASS: file:/home/pds4/dph_example_archive_VG2PLS/browse/Collection_browse.xml
INFO The member 'urn:nasa:pds:example.dph.sample_archive_bundle:browse:ele_mom::1.0' is identified in the following product: \
file:/home/pds4/dph_example_archive_VG2PLS/browse/ele_mom_browse.xml
INFO Identifier 'urn:nasa:pds:example.dph.sample_archive_bundle:browse::1.0' is a member of \
'file:/home/pds4/dph_example_archive_VG2PLS/bundle.xml'
PASS: file:/home/pds4/dph_example_archive_VG2PLS/context/Collection_context.xml
INFO The member 'urn:nasa:pds:context:instrument_host:spacecraft.vg2::1.0' is identified in the following product: \
file:/home/pds4/dph_example_archive_VG2PLS/context/PDS4_host_VG2_1.0.xml
INFO The member 'urn:nasa:pds:context:instrument:pls.vg2::1.0' is identified in the following product: \
file:/home/pds4/dph_example_archive_VG2PLS/context/PDS4_inst_PLS_VG2_1.0.xml
INFO The member 'urn:nasa:pds:context:investigation:mission.voyager::1.0' is identified in the following product: \
file:/home/pds4/dph_example_archive_VG2PLS/context/PDS4_mission_VOYAGER_1.0.xml
INFO The member 'urn:nasa:pds:context:target:planet.jupiter::1.0' is identified in the following product: \
file:/home/pds4/dph_example_archive_VG2PLS/context/PDS4_target_JUPITER_1.0.xml
INFO Identifier 'urn:nasa:pds:example.dph.sample_archive_bundle:context::1.0' is a member of \
'file:/home/pds4/dph_example_archive_VG2PLS/bundle.xml'
...
In the case that 2 targets are specified on the command line, the tool will treat each target as a separate entity when performing referential integrity checking. As an example, the following command demonstrates performing referential integrity on 2 different bundles:
% validate --target ${HOME}/bundle1, ${HOME}/bundle2 --rule pds4.bundle
The tool will perform referential integrity checking within the products located in the ${HOME}/bundle1 target, then will perform referential integrity checking within the products located in the ${HOME}/bundle2 target. In other words, the tool will not cross over to the ${HOME}/bundle2 directory to find LID/LIDVID references of a product in the ${HOME}/bundle1 directory.
Improve Performance
Validate is a very memory intensive applications that requires a significant amount of resources and time in order to complete validation on large data sets.
There are a few ways you can enhance the way validate executes PDS4 Bundle validation using several options. There are several flags added to validate so you can split out various parts and run multiple Validate executions to speed up the processing. However, to ensure proper validity of the archive, several of these flags should
only be used during development or staging of data prior to release.
Batching
For both memory and performance improvements, it is highly recommended that you batch large bundles, both in terms of data volume and number of products, into batches.
You can batch either by directory or by using target manifests.
# Point at several targets with different validate runs for parallelizing content validation
validate --rule pds4.label --target my_bundle/document/*.xml
validate --rule pds4.label --target my_bundle/release1/*.xml
validate --rule pds4.label --target my_bundle/release2/*.xml
validate --rule pds4.label --target my_bundle/release3/*.xml
# Or you could do the same thing with target manifests
validate --rule pds4.label --target-manifest documents.txt
validate --rule pds4.label --target-manifest release1_data.txt
validate --rule pds4.label --target-manifest release2_data.txt
validate --rule pds4.label --target-manifest release3_data.txt
Referential Integrity Checking Only
The –skip-product-validation flag when used with the pds4.bundle rule will only perform referential integrity checking
for the bundle, and ignore validation of the individual products themselves.
# Execute bundle validation but only check bundle/collection validity and ignore the products
% validate --skip-product-validation --rule pds4.bundle --target my_bundle
Specify Additional File Paths for Accumulating Bundles
When staging an accumulating bundle for release, there may be a case where you want to perform validation on the entire bundle
with the new data to-be-released, as well as the old data that is in the archive. The –alternate_file_paths flag can be
used to specify additional file paths you would like validate to check for files in.
NOTE: This should be used for staging and development purposes only, and validate should be re-run one the data once it has been released and is in line with the other bundle data.
% validate --skip-product-validation --rule pds4.bundle --target path/to/staged/bundle_v2 --alternate_file_paths path/to/online/bundle_v1
Example of using multiple-flags to improve performance
Here is one example of how to
split up execution. There are other permutations you could do to improve performance, but this is one example:
my_bundle/
├── bundle.xml
├── data
│ ├── data_collection.tab
│ ├── data_collection.xml
│ ├── release1
│ │ ├── file1.tab
│ │ ├── file1.xml
│ │ ├── file2.tab
│ │ └── file2.xml
│ ├── release2
│ │ ├── file3.tab
│ │ ├── file3.xml
│ │ ├── file4.tab
│ │ └── file4.xml
│ └── release3
│ ├── file5.tab
│ ├── file5.xml
│ ├── file6.tab
│ └── file6.xml
└── document
├── document_collection.tab
└── document_collection.xml
Here is how you could execute multiple validates to split out the work. **Note: Always make sure if you split out execution
that you execute Bundle Validation (pds4.bundle rule) and content validation.**
# Execute bundle validation but only check bundle/collection validity and ignore the products
validate --skip-product-validation --rule pds4.bundle --target my_bundle
# Make sure the labels are valid upon delivery but skip content validation until later since it takes longer
validate --skip-content-validation --rule pds4.label --target my_bundle
# Point at several targets with different validate runs for parallelizing content validation
validate --rule pds4.label --target my_bundle/document/*.xml
validate --rule pds4.label --target my_bundle/release1/*.xml
validate --rule pds4.label --target my_bundle/release2/*.xml
validate --rule pds4.label --target my_bundle/release3/*.xml
# Or you could do the same thing with target manifests
validate --rule pds4.label --target-manifest documents.txt
validate --rule pds4.label --target-manifest release1_data.txt
validate --rule pds4.label --target-manifest release2_data.txt
validate --rule pds4.label --target-manifest release3_data.txt
Using validate-bundle parallelization
To facilitate the splitting up, and running in parallel the data, one may use the validate-bundle script in the src/main/resources/bin directory.
This script has two prerequisites:
- the validate program be on your system path
- the GNU Parallel program be installed, and be on your system path
The usage looks like this:
./validate-bundle --target /path/to/bundle/bundle.xml
By default, this program will split your input files up into N groups. By default N is half the number of available cores on your machine. There are some circumstances where overriding this value may improve performance. If you wish to do so, you may use the “-n” or “–num-groups” argument.
./validate-bundle --target /dir/containing/products --num-groups 3
When this runs, it will break your inputs up into groups, and run validate on them in parallel. Here's an example showing a run using the default number of cores:
$ ./validate-bundle --target ~/dph_example_archive_VG2PLS/bundle.xml
validate binary is available (/Users/jpadams/Documents/proj/pds/pdsen/workspace/validate/validate-1.20.0-SNAPSHOT/bin/validate) [OK]
GNU parallel binary is available (/usr/local/bin/parallel) [OK]
Directory to process is : /Users/jpadams/dph_example_archive_VG2PLS
Number of effective cores on this system: 8
Half of effective cores on this system : 4 (usually better than running all cores)
Splitting up into groups, based on number of cores this machine has...
Total number of products found to validate: 18
Cleaning up files from previous runs...
Splitting up inputs into 4 groups...
(5 files per group)
+--------------------+----------------+
| Group | # in Group |
+--------------------+----------------+
| ./validate_set_aa | 5
| ./validate_set_ac | 5
| ./validate_set_ad | 3
| ./validate_set_ab | 5
+--------------------+-----------------
Running all 4 groups in parallel now...
validate --rule pds4.label --target-manifest ./validate_set_aa
validate --rule pds4.label --target-manifest ./validate_set_ac
validate --rule pds4.label --target-manifest ./validate_set_ad
validate --rule pds4.label --target-manifest ./validate_set_ab
Performing XML and Content validation...
Each validate command will output to an individual log.
real 0m13.615s
user 1m25.390s
sys 0m4.082s
Performing Referential Integrity validation...
Completed execution in 5365 ms
>>>>>>>>>>>>>>> ./validate_set_ad.log :
Summary:
2281 error(s)
0 warning(s)
Message Types:
2278 error.table.field_value_data_type_mismatch
2error.label.context_ref_not_found
1error.table.missing_CRLF
End of Report
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> ./validate_set_aa.log :
Summary:
6 error(s)
1 warning(s)
Message Types:
2error.label.context_ref_not_found
2error.table.fields_mismatch
2error.table.missing_CRLF
1warning.label.schematron
End of Report
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> ./validate_set_ac.log :
Summary:
12 error(s)
0 warning(s)
Message Types:
6error.label.context_ref_not_found
4error.table.missing_CRLF
2error.table.fields_mismatch
End of Report
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> ./validate_set_ab.log :
Summary:
6 error(s)
0 warning(s)
Message Types:
6error.label.context_ref_not_found
End of Report
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> ./validate_referential.log :
Summary:
1 error(s)
2 warning(s)
Message Types:
1error.file.name_has_invalid_characters
1warning.label.schematron
1warning.integrity.unreferenced_member
End of Report
>>>>>>>>>>>>>>>
Validation complete. See validate_20200217_151431/validate_summary.log for a summary of results.
All Validate Tool execution reports can be found in validate_20200217_151431.
Spot Checking Data
By default, the tool performs a byte by byte validation of the data content. To improve performance on large data sets upon ingestion into the archive, you can validate a subset of the content within the archive when a data provider pipeline has been verified. You can do this through spot check validation either by every Nth record of a product, or every Nth product.
Spot Checking Every Nth Record of a Product
Validates every Nth record within a given product.
% validate --target product.xml --spot-check-data 100
In the above example, assuming the data product is a table, the tool will perform content validation on every 100th record in the table. If the data content is an array, the tool will perform content validation on every 100th line in the array.
Spot Checking Every Nth Product
Validates every Nth product within a given target bundle or directory.
% validate --target product.xml --everyN 10
In the above example, assuming the target contains 100 products, the tool will perform label validation on all products, but content validation on only every 10th product.
Checksum Manifest File Validation
When a Checksum Manifest file is passed into the tool, the generated checksum value of a file is compared against the supplied value in the Manifest file.
The dph example archive bundle, which can be downloaded from the PDS web site, contains an example of how a Checksum Manifest file could look like:
97a7569daeaacf57b5abceca57bdca43 .\Product_Bundle.xml
e7da7276dd553f30496b868a2007bf5b .\README.TXT
84f68c7706f379c401e2f8e08a82edea .\browse\Collection_browse.xml
bcb852a6a9292e304a93668e6cc2068c .\browse\Collection_browse_inventory.tab
3ff61c98cbed11e99690f76b5f6831b0 .\browse\ELE_MOM.PDF
f2e5969b0f1a0f54e530e416b7f5d54a .\browse\ele_mom_browse.xml
76d6463510bc48233d65b46d08087ef8 .\context\Collection_context.xml
b8f5301ad7c868c76f0e627f0da19aed .\context\Collection_context_inventory.tab
c226a6a0867e003696a752b8c24e56f3 .\context\PDS4_host_VG2_1.0.xml
...
It is importatnt to note that the tool supports either absolute or relative file references specified in a Checksum Manifest file. In the event that the file references are relative paths, the tool assumes that the target root is the base path of these file references. The Parameter section of the Validate Tool Report will indicate the base path that the tool uses to resolve relative file references in a Manifest file. This is found under the setting Manifest File Base Path.
The following command demonstrates performing Checksum Manifest file validation against the dph example archive bundle using its manifest file bundle_checksums.txt:
% validate --target /home/pds4/dph_example_archive_VG2PLS -M /home/pds4/dph_example_archive_VG2PLS/bundle_checksums.txt
In the example above, the base path of the file references in the bundle_checksums.txt file is assumed to be /home/pds4/dph_example_archive_VG2PLS.
Another use case is doing checksum manifest file validation on a sub-directory of a bundle. Using the dph example archive bundle example, we would need to tell the tool to use a different base than the target root since the file references in the bundle_checksums.txt file would not match up with the target sub-directory. This can be done using the -B flag option. The following command demonstrates performing Checksum Manifest file validation on a a sub-directory of the dph example archive bundle:
% validate --target /home/pds4/dph_example_archive_VG2PLS/browse -M /home/pds4/dph_example_archive_VG2PLS/bundle_checksums.txt -B /home/pds4/dph_example_archive_VG2PLS
In the command line example above, the base path is set to /home/pds4/dph_example_archive_VG2PLS.
In the event that multiple targets are specified when performing checksum manifest file validation, the -B flag option must be specified. Continuing with the dph example archive bundle example, the following command demonstrates Checksum Manifest file validation on multiple sub-directories of the bundle:
% validate --target /home/pds4/dph_example_archive_VG2PLS/browse, /home/pds4/dph_example_archive_VG2PLS/context \
-M /home/pds4/dph_example_archive_VG2PLS/bundle_checksums.txt \
-B /home/pds4/dph_example_archive_VG2PLS
Using an XML Catalog
An XML Catalog allows the user to describe a mapping between external entity references in their products and locally-available XML Schema and Schematron documents. This section details some of the ways that the Catalog file can be set up that should support most use-case scenarios. The examples can be used to validate the ele_mom_tblChar.xml product label that can be found in the Data Provider's Handbook (DPH) example bundle, which is made available at the PDS website.
Mapping Label-Defined Schemas and Schematrons to Local Copies
The following is an example of an XML Catalog that maps schemas and schematrons defined in the product label to local copies:
<?xml version="1.0" encoding="UTF-8"?>
<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<group xml:base="file:///home/pds/dph_example_archive_VG2PLS/xml_schema/">
<uri name="https://pds.nasa.gov/pds4/pds/v1/PDS4_PDS_1700.xsd"
uri="PDS4_PDS_1700.xsd"/>
<uri name="https://pds.nasa.gov/pds4/dph/v1/PDS4_DPH_1700.xsd"
uri="PDS4_DPH_1700.xsd"/>
<uri name="https://pds.nasa.gov/pds4/pds/v1/PDS4_PDS_1700.sch"
uri="PDS4_PDS_1700.sch"/>
</group>
</catalog>
The xml:base attribute sets the top-level directory to where the local copies of the schemas and schematrons can be found. So, in this example, the https://pds.nasa.gov/pds4/pds/v1/PDS4_PDS_1700.xsd schema maps to the local schema at file:///home/pds/dph_example_archive_VG2PLS/xml_schema/PDS4_PDS_1700.xsd. Note that the xml:base attribute value must end in the backslash ‘/’ character in order for the tool to properly resolve the URI references set in the Catalog file.
Mapping Namespaces to Local Copies of Schemas
The following is an example of an XML Catalog that maps namespaces defined in the product label to local copies of the Schemas:
<?xml version="1.0" encoding="UTF-8"?>
<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<group xml:base="file:///home/pds/dph_example_archive_VG2PLS/xml_schema/">
<uri name="http://pds.nasa.gov/pds4/pds/v1"
uri="PDS4_PDS_1700.xsd"/>
<uri name="http://pds.nasa.gov/pds4/dph/v1"
uri="PDS4_DPH_1700.xsd"/>
<uri name="https://pds.nasa.gov/pds4/pds/v1/PDS4_PDS_1700.sch"
uri="PDS4_PDS_1700.sch"/>
</group>
</catalog>
In this example, the namespace http://pds.nasa.gov/pds4/pds/v1 maps to the schema file:///home/pds/dph_example_archive_VG2PLS/xml_schema/PDS4_PDS_1700.xsd.
Mapping Many Schemas At Once
The following is an example of an XML Catalog that maps many Schemas and Schematrons at once based on a common initial substring in those URIs:
<?xml version="1.0" encoding="UTF-8"?>
<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<rewriteURI uriStartString="https://pds.nasa.gov/pds4/pds/v1"
rewritePrefix="file:///home/pds/dph_example_archive_VG2PLS/xml_schema"/>
<rewriteURI uriStartString="https://pds.nasa.gov/pds4/dph/v1"
rewritePrefix="file:///home/pds/dph_example_archive_VG2PLS/xml_schema"/>
</catalog>
The uriStartString represents the prefix to look for in the product label. The rewritePrefix is the replacement string in order to resolve the URI reference. So in this example, the first entry maps the https://pds.nasa.gov/pds4/pds/v1/PDS4_PDS_1700.xsd schema in the product label to file:///home/pds/dph_example_archive_VG2PLS/xml_schema/PDS4_PDS_1700.xsd and maps the https://pds.nasa.gov/pds4/pds/v1/PDS4_PDS_1700.sch schematron to file:///home/pds/dph_example_archive_VG2PLS/xml_schema/PDS4_PDS_1700.sch.
Passing References to Another Catalog
The following example of an XML Catalog file passes off the DPH URI reference off to another XML Catalog named XMLCatalog_dph.xml for resolution:
<?xml version="1.0" encoding="UTF-8"?>
<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<delegateURI uriStartString="https://pds.nasa.gov/pds4/dph/v1"
catalog="file:///home/pds/catalog/dph/XMLCatalog_dph.xml"/>
<rewriteURI uriStartString="https://pds.nasa.gov/pds4/pds/v1"
rewritePrefix="file:///home/pds/dph_example_archive_VG2PLS/xml_schema"/>
</catalog>
The XMLCatalog_dph.xml would contain the following:
<?xml version="1.0" encoding="UTF-8"?>
<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<rewriteURI uriStartString="https://pds.nasa.gov/pds4/dph/v1"
rewritePrefix="file:///home/pds/dph_example_archive_VG2PLS/xml_schema"/>
</catalog>
In the first example, the uriStartString value in the delegateURI element matches the https://pds.nasa.gov/pds4/dph/v1/PDS4_DPH_1700.xsd DPH schema in the product label, so the tool passes this off to the XMLCatalog_dph.xml for resolution.
Using a Configuration File
A configuration file is an alternative way to set the different behaviors of the tool instead of the command-line option flags. It consists of a text file made up of keyword/value pairs. The configuration file follows the syntax of the stream parsed by the Java Properties.load(java.io.InputStream) method.
Some of the important syntax rules are as follows:
-
Blank lines and lines which begin with the hash character “#” are ignored.
-
Values may be separated on different lines if a backslash is placed at the end of the line that continues below.
-
Escape sequences for special characters like a line feed, a tabulation or a unicode character, are allowed in the values and are specified in the same notation as those used in Java strings (e.g. \n, \t, \r).
Since backslashes (\) have special meanings in a configuration file, keyword values that contain this character will not be interpreted properly by the Validate Tool even if it is surrounded by quotes. A common example would be a Windows path name (e.g. c:\pds\collection). Use the forward slash character instead (c:/pds/collection) or escape the backslash character (c:\\pds\\collection).
Note: Any flag specified on the command-line takes precedence over any equivalent settings placed in the configuration file.
The following table contains valid keywords that can be specified in the configuration file:
| Property Keyword | Property Value | Associated Command-Line Option |
|---|---|---|
| validate.target | [files,dirs] | -t, –target |
| validate.rule | [validation rule name] | -R, –rule |
| validate.checksum | [file] | -M, –checksum-manifest |
| validate.basePath | [path] | -B, –base-path |
| validate.catalog | [catalog files] | -C, –catalog |
| validate.schema | [schema files] | -x, –xsd |
| validate.schematron | [schematron files] | -S, –schematron |
| validate.noDataCheck | true | -D, –no-data-check |
| validate.spotCheckData | [number] | –spot-check-data |
| validate.allowUnlabeledFiles | true | –allow-unlabeled-files |
| validate.report | [file name] | -r, –report-file |
| validate.verbose | [1|2|3] | -v, –verbose |
| validate.reportStyle | [full|json|xml] | -s, –report-style |
| validate.regexp | [patterns] | -e, –regexp |
| validate.local | true | -L, –local |
| validate.model | [version] | -m, –model-version (DEPRECATED) |
| validate.force | true | -f, –force (DEPRECATED) |
| validate.maxErrors | [number] | -E, –max-errors |
| validate.updateContextProducts | true | -u,–update-context-products |
| validate.addContextProducts | [dir/files] | –add-context-products |
| validate.skipContextValidation | true | –skip-context-validation |
| validate.targetListFile | [dir/file] | –target-list-file |
The following example demonstrates how to set a configuration file:
# This is a Validate Tool configuration file
validate.target = ./collection
validate.report = report.txt
validate.regexp = "*.xml"
This is equivalent to running the tool with the following flags:
--target ./collection --label-extension "*.xml" --report report.txt
The following example demonstrates how to set a configuration file with multiple values for a keyword:
# This is a Validate Tool configuration file with multiple values
validate.target = product.xml, ./collection
validate.regexp = "*.xml", "Mars*"
This is equivalent to running the tool with the following flags:
--target product.xml, ./collection --label-extension "*.xml", "Mars*"
The following example demonstrates how to set a configuration file with multiple values that span across multiple lines:
# This is a Validate configuration file with multiple values
# that span across multiple lines
validate.target = product.xml, \
./collection
validate.regexp = "*.xml", \
"Mars*"
As previously mentioned, any flag options set on the command-line will overwrite settings set in the configuration file. The following example demonstrates how to override a setting in the configuration file.
Suppose the configuration file named config.txt is defined as follows:
validate.target = ./collection
validate.regexp = "*.xml"
This configuration allows the tool to validate files with a .xml extension in the collection directory. To change the behavior to validate all files instead of just files ending in .xml, then specify the regexp flag option on the command-line to overwrite the validate.regexp property:
% validate -c config.txt --label-extension "*"
Passing in Multiple Schemas
The Validate Tool allows multiple XML Schemas to be passed in through the command-line via the -x flag option. When passing in multiple schemas, the definitions found in each file are merged internally. In the case where two schemas are passed in and both define the same element under the same namespace, then the definition in the first schema passed in will take precedence over the second schema. As an example, suppose a schema file, schema1.xsd, contains the following definition:
<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
targetNamespace="http://pds.nasa.gov/pds4/pds/v1"
xmlns:pds="http://pds.nasa.gov/pds4/pds/v1"
elementFormDefault="qualified"
attributeFormDefault="unqualified"
version="1.1.0.0">
...
<xs:complexType name="File_Area_Browse">
<xs:annotation>
<xs:documentation> The File Area Browse class describes a file and one or more tagged_data_objects contained within the file. </xs:documentation>
</xs:annotation>
<xs:complexContent>
<xs:extension base="pds:File_Area">
<xs:sequence>
<xs:element name="File" type="pds:File" minOccurs="1" maxOccurs="1"> </xs:element>
<xs:choice minOccurs="1" maxOccurs="unbounded">
<xs:element name="Array_1D" type="pds:Array_1D"> </xs:element>
<xs:element name="Array_2D" type="pds:Array_2D"> </xs:element>
<xs:element name="Array_2D_Image" type="pds:Array_2D_Image"> </xs:element>
<xs:element name="Array_2D_Map" type="pds:Array_2D_Map"> </xs:element>
<xs:element name="Array_2D_Spectrum" type="pds:Array_2D_Spectrum"> </xs:element>
<xs:element name="Array_3D" type="pds:Array_3D"> </xs:element>
<xs:element name="Array_3D_Image" type="pds:Array_3D_Image"> </xs:element>
<xs:element name="Array_3D_Movie" type="pds:Array_3D_Movie"> </xs:element>
<xs:element name="Array_3D_Spectrum" type="pds:Array_3D_Spectrum"> </xs:element>
<xs:element name="Encoded_Header" type="pds:Encoded_Header"> </xs:element>
<xs:element name="Encoded_Image" type="pds:Encoded_Image"> </xs:element>
<xs:element name="Header" type="pds:Header"> </xs:element>
<xs:element name="Stream_Text" type="pds:Stream_Text"> </xs:element>
<xs:element name="Table_Binary" type="pds:Table_Binary"> </xs:element>
<xs:element name="Table_Character" type="pds:Table_Character"> </xs:element>
<xs:element name="Table_Delimited" type="pds:Table_Delimited"> </xs:element>
</xs:choice>
</xs:sequence>
</xs:extension>
</xs:complexContent>
</xs:complexType>
...
Suppose the other schema, schema2.xsd, contains the same element definition:
<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
targetNamespace="http://pds.nasa.gov/pds4/pds/v1"
xmlns:pds="http://pds.nasa.gov/pds4/pds/v1"
elementFormDefault="qualified"
attributeFormDefault="unqualified"
version="1.0.0.0">
...
<xs:complexType name="File_Area_Browse">
<xs:annotation>
<xs:documentation> The File Area Browse class describes a file and one or more tagged_data_objects contained within the file. </xs:documentation>
</xs:annotation>
<xs:complexContent>
<xs:extension base="pds:File_Area">
<xs:sequence>
<xs:element name="File" type="pds:File" minOccurs="1" maxOccurs="1"> </xs:element>
<xs:choice minOccurs="1" maxOccurs="unbounded">
<xs:element name="Array_2D" type="pds:Array_2D"> </xs:element>
<xs:element name="Array_2D_Image" type="pds:Array_2D_Image"> </xs:element>
<xs:element name="Array_2D_Map" type="pds:Array_2D_Map"> </xs:element>
<xs:element name="Array_2D_Spectrum" type="pds:Array_2D_Spectrum"> </xs:element>
<xs:element name="Array_3D" type="pds:Array_3D"> </xs:element>
<xs:element name="Array_3D_Image" type="pds:Array_3D_Image"> </xs:element>
<xs:element name="Array_3D_Movie" type="pds:Array_3D_Movie"> </xs:element>
<xs:element name="Array_3D_Spectrum" type="pds:Array_3D_Spectrum"> </xs:element>
<xs:element name="Encoded_Header" type="pds:Encoded_Header"> </xs:element>
<xs:element name="Encoded_Image" type="pds:Encoded_Image"> </xs:element>
<xs:element name="Header" type="pds:Header"> </xs:element>
<xs:element name="Stream_Text" type="pds:Stream_Text"> </xs:element>
<xs:element name="Table_Binary" type="pds:Table_Binary"> </xs:element>
<xs:element name="Table_Character" type="pds:Table_Character"> </xs:element>
<xs:element name="Table_Delimited" type="pds:Table_Delimited"> </xs:element>
</xs:choice>
</xs:sequence>
</xs:extension>
</xs:complexContent>
</xs:complexType>
...
If the schemas are passed into the Validate Tool as follows:
% validate product.xml -x schema1.xsd, schema2.xsd
then the File_Area_Browse definition from the schema1.xsd file takes precedence over the schema2.xsd file. If it was passed into the tool in the reverse order, then the File_Area_Browse definition in the schema2.xsd file will take precedence over the one in the schema1.xsd file.
Context Product Reference Validation
The resources/ folder in the Validate Tool Release Package contains a JSON-formatted file that contains a list intended to represent a snapshot of the Context Product LIDVIDs (Logical Identifier/Version Identifier) currently registerd at the PDS Engineering Node. This file is read in at execution time so that the tool can validate that Context Products referenced in a product label exist within this supplied list. In the event that you would like the tool to check for additional Context Products that are not a part of this supplied list, simply edit the resources/registered_context_products.json file and add to the existing list.
Report Format
This section describes the contents of the Validate Tool report. The links below detail the validation results of the same run for each format.
The tool can represent a validation report in three different formats: a full, XML, or JSON format. The report style option is used to change the formatting. When this option is not specified on the command-line, the default is to generate a full report.
Full Report
In a full report, the location, severity, message type, and textual description of each detected anomaly is reported. A ‘PASS’, ‘FAIL’, or ‘SKIP’ keyword is displayed next to each file to indicate when a file has passed, failed, or skipped PDS validation, respectively. A summary is printed at the end indicating the total number of warnings and errors, followed by a summary of each of the different message types that were found in the validation run.
XML Report
In an XML report, the contents are the same as the full report.
JSON Report
In a JSON report, the contents are the same as the full report.
Common Errors
See Common Errors page for more details.
Performance
Validate does a lot of varying checks on products from the schema/schematron checks to the ensuring the validity the actual product content. We are continuing to improve performance of the software, but there are also things you can do to split up execution in order to maximize your computer's processing power to speed up performance.
Metrics
To give you a sense of how long it would take to validate individual products with content validation enabled, the following are are a few benchmarks for validate performance. These times are rough estimates subject to local operating system. Please contact Engineering Node if these times are significantly different from your execution times:
| Content Validation Enabled | |||
|---|---|---|---|
| Number of Products | Avg. Product Size (MB) | Total Time to Completion | Avg. Time/Product |
| 1 | 4 | 4s | 4s |
| 1 | 10 | 6s | 6s |
| 1 | 50 | 7s | 7s |
| 1 | 4800 | 600s | 600s |
| 1 | 0.1 | 11.069s | |
| 1 | 3 | 17.208s | |
| 1 | 30 | 21.792s,21.591s | |
| 1 | 120 | 30.029s,30.291s | |
| 1 | 4945 | 43.988s | |
| 40 | 3.44 | 77.554s | 1.9s |
| 151 | 18.98 | 469.003s,464.861s | 3.1s |
| 541 | 7 | 901.993s,890.327s | 1.68s |
| 925 | 9.3 | 1734.853s,1732.398s | 1.88s |
| 4099 | 10.49 | 8629.407s | 2.10s |
| 23189 | 8.2 | 82105s (~23h) | 3.5s |
| Content Validation Disabled (–no-data-check) | |||
| Number of Labels | Avg. Label Size (KB) | Total Time to Completion | Avg. Time/Label |
| 151 | 40 | 215s | 1.4s |
| 1347 | 40 | 1655s | 1.2s |
| 22164 | 40 | 47160s | 2.1s |
| Content Validation Disabled (–skip-content-validation) | |||
| Number of Products | Avg. Product Size (MB) | Total Time to Completion | Avg. Time/Product |
| 1 | 0.1 | 9.207s | |
| 1 | 3 | 14.531s | |
| 1 | 30 | 14.250s,14.228s | |
| 1 | 120 | 14.714s,14.533s | |
| 1 | 4945 | 30.445s,30.211s | |
| 40 | 3.44 | 45.010s | 1.13s |
| 151 | 18.98 | 115.098s,114.192s | 0.76s |
| 541 | 7 | 334.860s,333.391s | 0.62s |
| 925 | 9.3 | 548.309s,552.169s | 0.59s |
| 4099 | 10.49 | 2326.820s | 0.57s |
| 22164 | N/A | 12323.288s | 0.56s |
| Content Validation Disabled (–skip-content-validation) and using Catalog File (local schemas) | |||
| Number of Labels | Avg. Label Size (KB) | Total Time to Completion | Avg. Time/Label |
| 151 | 40 | 196s | 1.3s |
| 1347 | 40 | 1454s | 1.1s |
Maximize Performance
See Advanced Bundle Validation above for more details on how to maximize performance when validating bundles.